pydemic
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Reference: Parameter inference
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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Y
_
__call__() (pydemic.LikelihoodEstimator method)
(pydemic.models.seirpp.NonMarkovianSEIRSimulationBase method)
(pydemic.Simulation method)
B
bounds (pydemic.SampleParameter attribute)
C
compartments (pydemic.Simulation attribute)
convolve_pdf() (pydemic.distributions.DistributionBase method)
convolve_survival() (pydemic.distributions.DistributionBase method)
covid_tracking() (in module pydemic.data.united_states)
D
data (pydemic.hdf.HDFBackend attribute)
differential_evolution() (pydemic.LikelihoodEstimator method)
DistributionBase (class in pydemic.distributions)
E
ErlangProcess (class in pydemic)
evaluator (pydemic.Reaction attribute)
F
fixed_values (pydemic.hdf.HDFBackend attribute)
G
GammaDistribution (class in pydemic)
GammaProcess (class in pydemic)
get_age_distribution() (in module pydemic.data.united_states)
get_initial_positions() (pydemic.LikelihoodEstimator method)
get_log_likelihood() (pydemic.LikelihoodEstimator method)
get_model_data() (pydemic.models.seirpp.NonMarkovianSEIRSimulationBase class method)
get_population() (in module pydemic.data.united_states)
get_reactions() (pydemic.ErlangProcess method)
(pydemic.PassiveReaction method)
(pydemic.Reaction method)
H
HDFBackend (class in pydemic.hdf)
I
init_from_kwargs() (pydemic.MitigationModel class method)
L
lhs (pydemic.ErlangProcess attribute)
(pydemic.Reaction attribute)
LikelihoodEstimator (class in pydemic)
M
mean (pydemic.SampleParameter attribute)
MitigationModel (class in pydemic)
N
name (pydemic.SampleParameter attribute)
NonMarkovianSEIRSimulationBase (class in pydemic.models.seirpp)
nyt() (in module pydemic.data.united_states)
P
PassiveReaction (class in pydemic)
poisson_norm() (in module pydemic.sampling)
pydemic.data (module)
pydemic.data.united_states (module)
pydemic.distributions (module)
pydemic.hdf (module)
pydemic.mitigation (module)
pydemic.models (module)
pydemic.reactions (module)
pydemic.sampling (module)
pydemic.simulation (module)
R
Reaction (class in pydemic)
rhs (pydemic.ErlangProcess attribute)
(pydemic.Reaction attribute)
S
sample_emcee() (pydemic.LikelihoodEstimator method)
sample_parameters (pydemic.hdf.HDFBackend attribute)
sample_uniform() (pydemic.LikelihoodEstimator method)
SampleParameter (class in pydemic)
scale (pydemic.ErlangProcess attribute)
SEIRPlusPlusSimulation (class in pydemic.models)
shape (pydemic.ErlangProcess attribute)
sigma (pydemic.SampleParameter attribute)
Simulation (class in pydemic)
SimulationState (class in pydemic)
simulator (pydemic.hdf.HDFBackend attribute)
StateLogger (class in pydemic)
sum() (pydemic.SimulationState method)
T
t (pydemic.StateLogger attribute)
Y
y (pydemic.StateLogger attribute)
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